.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/Plots/plot_ectopic.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_Plots_plot_ectopic.py>`
        to download the full example code

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_Plots_plot_ectopic.py:


Plot ectopic beats
==================

.. GENERATED FROM PYTHON SOURCE LINES 7-13

.. code-block:: default


    # Author: Nicolas Legrand <nicolas.legrand@cfin.au.dk>
    # Licence: GPL v3

    from systole.plots import plot_ectopic








.. GENERATED FROM PYTHON SOURCE LINES 14-16

Visualizing ectopic subspace from RR time series
------------------------------------------------

.. GENERATED FROM PYTHON SOURCE LINES 16-22

.. code-block:: default

    from systole import import_rr

    # Import PPG recording as numpy array
    rr = import_rr().rr.to_numpy()

    plot_ectopic(rr, input_type="rr_ms")



.. image-sg:: /auto_examples/Plots/images/sphx_glr_plot_ectopic_001.png
   :alt: Subspace 1   (ectopic beats detection)
   :srcset: /auto_examples/Plots/images/sphx_glr_plot_ectopic_001.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    <Axes: title={'center': 'Subspace 1 \n (ectopic beats detection)'}, xlabel='Subspace $S_{11}$', ylabel='Subspace $S_{12}$'>



.. GENERATED FROM PYTHON SOURCE LINES 23-25

Visualizing ectopic subspace from the `artefact` dictionary generated by :py:func:`systole.detection.rr_artefacts()`
--------------------------------------------------------------------------------------------------------------------

.. GENERATED FROM PYTHON SOURCE LINES 25-31

.. code-block:: default

    from systole.detection import rr_artefacts

    # Use the rr_artefacts function to find ectopic beats
    artefacts = rr_artefacts(rr)

    plot_ectopic(artefacts=artefacts)



.. image-sg:: /auto_examples/Plots/images/sphx_glr_plot_ectopic_002.png
   :alt: Subspace 1   (ectopic beats detection)
   :srcset: /auto_examples/Plots/images/sphx_glr_plot_ectopic_002.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    <Axes: title={'center': 'Subspace 1 \n (ectopic beats detection)'}, xlabel='Subspace $S_{11}$', ylabel='Subspace $S_{12}$'>



.. GENERATED FROM PYTHON SOURCE LINES 32-34

Using Bokeh as plotting backend
-------------------------------

.. GENERATED FROM PYTHON SOURCE LINES 34-44

.. code-block:: default

    from bokeh.io import output_notebook
    from bokeh.plotting import show
    from systole.detection import rr_artefacts

    output_notebook()

    # Use the rr_artefacts function to find ectopic beats
    artefacts = rr_artefacts(rr)
    show(
        plot_ectopic(artefacts=artefacts, backend="bokeh")
    )







.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.613 seconds)


.. _sphx_glr_download_auto_examples_Plots_plot_ectopic.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example




    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_ectopic.py <plot_ectopic.py>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_ectopic.ipynb <plot_ectopic.ipynb>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_