.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/Plots/plot_raw.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_Plots_plot_raw.py>`
        to download the full example code

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_Plots_plot_raw.py:


Plot raw physiological signal
=============================

.. GENERATED FROM PYTHON SOURCE LINES 7-18

.. code-block:: default


    # Author: Nicolas Legrand <nicolas.legrand@cfin.au.dk>
    # Licence: GPL v3


    from bokeh.io import output_notebook
    from bokeh.plotting import show
    from systole.plots import plot_raw

    from systole import import_dataset1, import_ppg








.. GENERATED FROM PYTHON SOURCE LINES 19-21

Plot raw ECG signal
--------------------

.. GENERATED FROM PYTHON SOURCE LINES 21-28

.. code-block:: default


    # Import PPG recording as pandas data frame
    physio_df = import_dataset1(modalities=['ECG', 'Respiration'])

    # Only use the first 60 seconds for demonstration
    ecg = physio_df[physio_df.time.between(60, 90)].ecg
    plot_raw(ecg, modality='ecg', sfreq=1000, detector='sleepecg')



.. image-sg:: /auto_examples/Plots/images/sphx_glr_plot_raw_001.png
   :alt: ECG recording
   :srcset: /auto_examples/Plots/images/sphx_glr_plot_raw_001.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


      0%|          | 0/2 [00:00<?, ?it/s]
    Downloading ECG channel:   0%|          | 0/2 [00:00<?, ?it/s]
    Downloading ECG channel:  50%|█████     | 1/2 [00:00<00:00,  2.85it/s]
    Downloading Respiration channel:  50%|█████     | 1/2 [00:00<00:00,  2.85it/s]
    Downloading Respiration channel: 100%|██████████| 2/2 [00:00<00:00,  1.93it/s]
    Downloading Respiration channel: 100%|██████████| 2/2 [00:00<00:00,  2.03it/s]

    <Axes: title={'center': 'ECG recording'}, ylabel='ECG (mV)'>



.. GENERATED FROM PYTHON SOURCE LINES 29-32

Plot raw PPG signal
-------------------
Import Respiration recording as pandas data frame

.. GENERATED FROM PYTHON SOURCE LINES 32-37

.. code-block:: default

    rsp = import_dataset1(modalities=['Respiration'])

    # Only use the first 90 seconds for demonstration
    rsp = physio_df[physio_df.time.between(500, 600)].respiration
    plot_raw(rsp, sfreq=1000, modality="respiration")



.. image-sg:: /auto_examples/Plots/images/sphx_glr_plot_raw_002.png
   :alt: Respiration
   :srcset: /auto_examples/Plots/images/sphx_glr_plot_raw_002.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


      0%|          | 0/1 [00:00<?, ?it/s]
    Downloading Respiration channel:   0%|          | 0/1 [00:00<?, ?it/s]
    Downloading Respiration channel: 100%|██████████| 1/1 [00:00<00:00,  2.63it/s]
    Downloading Respiration channel: 100%|██████████| 1/1 [00:00<00:00,  2.63it/s]

    <Axes: title={'center': 'Respiration'}, ylabel='Respiratory signal'>



.. GENERATED FROM PYTHON SOURCE LINES 38-40

Plot raw respiratory signal
---------------------------

.. GENERATED FROM PYTHON SOURCE LINES 40-47

.. code-block:: default


    # Import PPG recording as pandas data frame
    ppg = import_ppg()

    # Only use the first 60 seconds for demonstration
    plot_raw(ppg[ppg.time<60], sfreq=75)




.. image-sg:: /auto_examples/Plots/images/sphx_glr_plot_raw_003.png
   :alt: PPG recording
   :srcset: /auto_examples/Plots/images/sphx_glr_plot_raw_003.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    <Axes: title={'center': 'PPG recording'}, ylabel='PPG level (a.u.)'>



.. GENERATED FROM PYTHON SOURCE LINES 48-50

Using Bokeh as plotting backend
-------------------------------

.. GENERATED FROM PYTHON SOURCE LINES 50-55

.. code-block:: default


    output_notebook()

    show(
        plot_raw(ppg, backend="bokeh", show_heart_rate=True, show_artefacts=True)
     )



.. rst-class:: sphx-glr-script-out

 .. code-block:: none

    BokehDeprecationWarning: CDSView.source is no longer needed, and is now ignored. In a future release, passing source will result an error.
    BokehDeprecationWarning: CDSView.filters was deprecated in bokeh 3.0. Use CDSView.filter instead.
    BokehDeprecationWarning: CDSView.source is no longer needed, and is now ignored. In a future release, passing source will result an error.
    BokehDeprecationWarning: CDSView.filters was deprecated in bokeh 3.0. Use CDSView.filter instead.





.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 2.862 seconds)


.. _sphx_glr_download_auto_examples_Plots_plot_raw.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example




    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_raw.py <plot_raw.py>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_raw.ipynb <plot_raw.ipynb>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_