.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/Plots/plot_rr.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_Plots_plot_rr.py>`
        to download the full example code

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_Plots_plot_rr.py:


Plot instantaneous heart rate
=============================

.. GENERATED FROM PYTHON SOURCE LINES 7-17

.. code-block:: default


    # Author: Nicolas Legrand <nicolas.legrand@cfin.au.dk>
    # Licence: GPL v3

    from bokeh.io import output_notebook
    from bokeh.plotting import show
    from systole.plots import plot_rr

    from systole import import_rr








.. GENERATED FROM PYTHON SOURCE LINES 18-20

Plot instantaneous heart rate from a RR interval time series (in milliseconds).
-------------------------------------------------------------------------------

.. GENERATED FROM PYTHON SOURCE LINES 20-25

.. code-block:: default


    # Import R-R intervals time series
    rr = import_rr().rr.values

    plot_rr(rr=rr, input_type="rr_ms");



.. image-sg:: /auto_examples/Plots/images/sphx_glr_plot_rr_001.png
   :alt: Instantaneous heart rate
   :srcset: /auto_examples/Plots/images/sphx_glr_plot_rr_001.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    <Axes: title={'center': 'Instantaneous heart rate'}, xlabel='Time', ylabel='R-R interval (ms)'>



.. GENERATED FROM PYTHON SOURCE LINES 26-28

Only show the interpolated instantaneous heart rate, add a bad segment and change the default unit to beats per minute (BPM).
-----------------------------------------------------------------------------------------------------------------------------

.. GENERATED FROM PYTHON SOURCE LINES 28-29

.. code-block:: default

    plot_rr(rr=rr, input_type="rr_ms", unit="bpm", points=False);



.. image-sg:: /auto_examples/Plots/images/sphx_glr_plot_rr_002.png
   :alt: Instantaneous heart rate
   :srcset: /auto_examples/Plots/images/sphx_glr_plot_rr_002.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    <Axes: title={'center': 'Instantaneous heart rate'}, xlabel='Time', ylabel='Beats per minute (bpm)'>



.. GENERATED FROM PYTHON SOURCE LINES 30-32

Use Bokeh as a plotting backend, only show the scatterplt and highlight artefacts in the RR intervals
-----------------------------------------------------------------------------------------------------

.. GENERATED FROM PYTHON SOURCE LINES 32-39

.. code-block:: default

    output_notebook()

    show(
        plot_rr(
        rr=rr, input_type="rr_ms", backend="bokeh", 
        line=False, show_artefacts=True
        )
    )



.. rst-class:: sphx-glr-script-out

 .. code-block:: none

    BokehDeprecationWarning: CDSView.source is no longer needed, and is now ignored. In a future release, passing source will result an error.
    BokehDeprecationWarning: CDSView.filters was deprecated in bokeh 3.0. Use CDSView.filter instead.
    BokehDeprecationWarning: CDSView.source is no longer needed, and is now ignored. In a future release, passing source will result an error.
    BokehDeprecationWarning: CDSView.filters was deprecated in bokeh 3.0. Use CDSView.filter instead.





.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.671 seconds)


.. _sphx_glr_download_auto_examples_Plots_plot_rr.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example




    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_rr.py <plot_rr.py>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_rr.ipynb <plot_rr.ipynb>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_