systole.plots.plot_events

systole.plots.plot_events(triggers: Optional[Union[List, ndarray]] = None, triggers_idx: Optional[Union[List, ndarray]] = None, labels: Optional[Union[Dict[str, str], List, str]] = None, tmin: float = -1.0, tmax: float = 10.0, sfreq: int = 1000, behavior: Optional[Union[List, DataFrame]] = None, figsize: Optional[Union[int, List[int], Tuple[int, int]]] = None, ax: Optional[Axes] = None, backend: str = 'matplotlib', palette: Optional[List[str]] = None) → Union[Axes, figure]

Visualize the occurence of events along the physiological recording.

Parameters

triggers

The events triggers. 0 indicates no events, 1 indicates the triger for one event. Different conditions should be provided separately as list of arrays.

triggers_idx

Trigger indexes. Each value encode the sample where an event occured (see also sfreq). Different conditions should be provided separately as list of arrays (can have different lenght).

labels

The events label. The key of the dictionary is the condition number (from 1 to n, as str), the value is the label (str). Default set to {“1”: “Event - 1”} if one condition is provided, and generalize up to n conditions {“n”: “Event - n”}.

tmin, tmax

Start and end time of the epochs in seconds, relative to the time-locked event. Defaults to -1.0 and 10.0, respectively.

sfreq

Signal sampling frequency. Default is set to 1000 Hz.

behavior

(Optional) Additional information about trials that will appear when hovering on the area (bokeh version only). A py:class:pd.DataFrame instance with length = n trials, or a list of py:class:pd.DataFrame (for multiple conditions) should be provided.

figsize

Figure size. Default is (13, 5).

axmatplotlib.axes.Axes | bokeh.plotting.figure.Figure | None

Where to draw the plot. Default is None (create a new figure).

backend

Select plotting backend (“matplotlib”, “bokeh”). Defaults to “matplotlib”.

palette

Color palette. Default sets to Seaborn “deep”.

Returns

plot

The matplotlib axes, or the boken figure containing the plot.

Raises

ValueError

When no triggers or triggers indexes are provided. When both triggers and triggers indexes are provided. If the length of behavior optional data does not match with the provide triggers. If invalid event names are provided.

See also

plot_rr, plot_raw

Examples

Plot events distributions using Matplotlib as plotting backend.

import numpy as np
import seaborn as sns
from systole.plots import plot_events
from systole import import_dataset1

ecg_df = import_dataset1(modalities=['ECG', "Stim"])

# Get events triggers
triggers_idx = [
     np.where(ecg_df.stim.to_numpy() == 2)[0],
     np.where(ecg_df.stim.to_numpy() == 1)[0]
]

plot_events(
    triggers_idx=triggers_idx, labels=["Disgust", "Neutral"],
    tmin=-0.5, tmax=10.0, figsize=(13, 3),
    palette=[sns.xkcd_rgb["denim blue"], sns.xkcd_rgb["pale red"]],
 )

<Axes: xlabel='Time'>

Plot events distributions using Bokeh as plotting backend and add the RR time series.

from systole.detection import ecg_peaks
from systole.plots import plot_rr
from bokeh.io import output_notebook
from bokeh.plotting import show
output_notebook()

# Peak detection in the ECG signal using the Pan-Tompkins method
signal, peaks = ecg_peaks(ecg_df.ecg, method='pan-tompkins', sfreq=1000)

# First, we create a RR interval plot
rr_plot = plot_rr(peaks, input_type='peaks', backend='bokeh', figsize=250)

# Then we add events annotations to this plot using the plot_events function
show(
     plot_events(
         triggers_idx=triggers_idx, labels=["Disgust", "Neutral"],
         tmin=-0.5, tmax=10.0, ax=rr_plot.children[0], backend="bokeh",
         palette=[sns.xkcd_rgb["denim blue"], sns.xkcd_rgb["pale red"]],
     )
)

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